HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4gpx

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 15.67 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4gpx
Reference Kondo Jiro, Koganei Mai, Maianti Juan Pablo, Ly Vu Linh, Hanessian Stephen. . Crystal Structures of a Bioactive 6′‐Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites ChemMedChem

Compound 6HS
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 74.43 Å3
Hydrophobicity 0.373
Hydrophilicity 0.790
Buriedness 0.591
Don/acc character 1.741
SiteScore 0.652
D Score 0.620

Compound 6HS
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 63.80 Å3
Hydrophobicity 0.000
Hydrophilicity 0.987
Buriedness 0.596
Don/acc character 0.998
SiteScore 0.568
D Score 0.496