HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4gpx

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 15.67 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4gpx
Reference Kondo Jiro, Koganei Mai, Maianti Juan Pablo, Ly Vu Linh, Hanessian Stephen. . Crystal Structures of a Bioactive 6′‐Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites ChemMedChem

Compound 6HS
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 76.49 Å3
Hydrophobicity 0.375
Hydrophilicity 0.785
Buriedness 0.585
Don/acc character 2.339
SiteScore 0.799
D Score 0.619

Compound 6HS
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 65.17 Å3
Hydrophobicity 0.211
Hydrophilicity 0.871
Buriedness 0.588
Don/acc character 1.411
SiteScore 0.778
D Score 0.584