HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4gpy

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 15.64 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4gpy
Reference Kondo Jiro, Koganei Mai, Maianti Juan Pablo, Ly Vu Linh, Hanessian Stephen. . Crystal Structures of a Bioactive 6′‐Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites ChemMedChem

Compound 6HS
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 107.02 Å3
Hydrophobicity 0.097
Hydrophilicity 0.890
Buriedness 0.572
Don/acc character 2.758
SiteScore 0.670
D Score 0.640

Compound 6HS
Residue . / 102
Chain D / A
Non-redundant False
Interacting RNA chains A/A, B/B
Volume 47.33 Å3
Hydrophobicity 0.253
Hydrophilicity 0.789
Buriedness 0.543
Don/acc character 2.533
SiteScore 0.593
D Score 0.557