HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4f8u

System information

Experimental technique X-ray
Experimental resolution 2.00
System mass 14.69 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4f8u
Reference Kondo Jiro, Koganei Mai, Kasahara Tomoko. . Crystal Structure and Specific Binding Mode of Sisomicin to the Bacterial Ribosomal Decoding Site ACS Medicinal Chemistry Letters

Compound SIS
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 103.59 Å3
Hydrophobicity 0.221
Hydrophilicity 0.786
Buriedness 0.553
Don/acc character 0.880
SiteScore 0.700
D Score 0.692

Compound SIS
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 48.02 Å3
Hydrophobicity 0.096
Hydrophilicity 0.827
Buriedness 0.543
Don/acc character 0.826
SiteScore 0.644
D Score 0.620