HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4f8u

System information

Experimental technique X-ray
Experimental resolution 2.00
System mass 14.69 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4f8u
Reference Kondo Jiro, Koganei Mai, Kasahara Tomoko. . Crystal Structure and Specific Binding Mode of Sisomicin to the Bacterial Ribosomal Decoding Site ACS Medicinal Chemistry Letters

Compound SIS
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 112.50 Å3
Hydrophobicity 0.084
Hydrophilicity 0.785
Buriedness 0.548
Don/acc character 3.776
SiteScore 0.719
D Score 0.718

Compound SIS
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 53.16 Å3
Hydrophobicity 0.260
Hydrophilicity 0.804
Buriedness 0.542
Don/acc character 3.176
SiteScore 0.636
D Score 0.611