Harnessing RIBOnucleic acid - Small molecules Structures
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Human nuclear pre-60S ribosomal subunit (State I3)
SM: GTP
40S subunit of the Giardia lamblia 80S ribosome
SM: YAT
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
SM: G4P
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
SM: GCP
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V1 conformation
mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)
SM: 3H3 ANM
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
SM: 3H3 ANM GSP
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
SM: 3HE GSP HMT
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
SM: PAR
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
SM: SPM
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
SM: GNP
Dibekacin-bound E.coli 70S ribosome in the PURE system
SM: 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D SPM
Arbekacin-bound E.coli 70S ribosome in the PURE system
SM: 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G SPM
Dibekacin-added human 80S ribosome
SM: 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D
Arbekacin-added human 80S ribosome
SM: 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
SM: 3HE
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Cryo-EM structure of the human 55S mitoribosome with Tigecycline
SM: T1C T1C T1C T1C
Cryo-EM structure of the human 39S mitoribosome with Tigecycline
SM: T1C
Cryo-EM structure of the human 80S ribosome with Tigecycline
SM: T1C T1C T1C T1C T1C T1C T1C T1C T1C
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
SM: GDP T1C T1C T1C T1C T1C T1C
Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
SM: T1C T1C T1C T1C T1C T1C
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
SM: 3K5 3K5 PAR PAR PAR PAR PAR PAR PAR PAR
Structure of Candida albicans 80S ribosome in complex with mefloquine
SM: SPK YMZ YMZ
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
SM: 3K5 3K5 PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
SM: 3K5 PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)
SM: 3K5 3K5 GET GET
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
E167K RF2 on E. coli 70S release complex with UGG (Structure II)
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
SM: WUX
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
SM: FUA
Ternary complex of translating ribosome, NAC and METAP1
SM: SPM SPM SPM
80S yeast ribosome in complex with HaterumaimideQ
SM: X1K X1K
Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells
SM: CLM SPM SPM SPM SPM
Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit
80S yeast ribosome in complex with Fluorolissoclimide
SM: VDU VDU
Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells
Yeast 60S ribosomal subunit, RPL39 deletion
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Yeast 60S ribosomal subunit
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)
SM: CLM
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)
80S yeast ribosome in complex with Methyllissoclimide
SM: XBI XBI
Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
SM: ATP ATP
Mouse RPL39L integrated into the yeast 60S ribosomal subunit
80S yeast ribosome in complex with Bromolissoclimide
SM: ZWB ZWB
Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8