Complex 8hl1
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.93 |
| System mass | 2575.89 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Sulfolobus |
| RCSB PDB Entry | 8hl1 |
| Reference | Wang Ying-Hui, Dai Hong, Zhang Ling, Wu Yun, Wang Jingfen, Wang Chen, Xu Cai-Huang, Hou Hai, Yang Bing, Zhu Yongqun, Zhang Xing, Zhou Jie. 2023. Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome Nucleic Acids Research |
| Equivalence Class |
NR_all_27894.7
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GNP |
| Residue | . / 801 |
| Chain | UB / AEFG |
| Non-redundant | True |
| Interacting RNA chains | B/A23S |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/A23S: rRNA |
| RNA family global | rRNA |
| Volume | 253.82 Å3 |
| Hydrophobicity | 0.077 |
| Hydrophilicity | 1.851 |
| Buriedness | 0.794 |
| Don/acc character | 0.632 |
| SiteScore | 1.064 |
| D Score | 0.813 |
| Kd | — |