HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8pv3

System information

Experimental technique Electron Microscopy
Experimental resolution 2.80
System mass 3064.13 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Thermochaetoides
RCSB PDB Entry 8pv3
Reference Thoms Matthias, Lau Benjamin, Cheng Jingdong, Fromm Lisa, Denk Timo, Kellner Nikola, Flemming Dirk, Fischer Paulina, Falquet Laurent, Berninghausen Otto, Beckmann Roland, Hurt Ed. . Structural insights into coordinating 5S RNP rotation with ITS2 pre‐RNA processing during ribosome formation The EMBO Reports
Equivalence Class NR_all_93493.10
BGSU version: 4.49

Compound GTP
Residue . / 1003
Chain NB / Cd
Non-redundant True
Interacting RNA chains A/C1
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/C1: rRNA
RNA family global rRNA
Volume 280.92 Å3
Hydrophobicity 0.297
Hydrophilicity 1.551
Buriedness 0.760
Don/acc character 0.440
SiteScore 1.042
D Score 0.890
Kd