Complex 8p7y
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.70 |
| System mass | 2393.54 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Mycoplasmoides |
| RCSB PDB Entry | 8p7y |
| Reference | Xue Liang, Spahn Christian M. T., Schacherl Magdalena, Mahamid Julia. . Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_06181.4
BGSU version: 4.49 |
| Compound | CLM |
| Residue | . / 3001 |
| Chain | IB / 3 |
| Non-redundant | True |
| Interacting RNA chains | D/3 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/3: rRNA |
| RNA family global | rRNA |
| Volume | 684.29 Å3 |
| Hydrophobicity | 0.829 |
| Hydrophilicity | 1.090 |
| Buriedness | 0.811 |
| Don/acc character | 1.111 |
| SiteScore | 1.225 |
| D Score | 1.071 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3229 |
| Chain | CK / 3 |
| Non-redundant | True |
| Interacting RNA chains | D/3 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/3: rRNA |
| RNA family global | rRNA |
| Volume | 671.59 Å3 |
| Hydrophobicity | 0.470 |
| Hydrophilicity | 1.492 |
| Buriedness | 0.828 |
| Don/acc character | 0.892 |
| SiteScore | 1.087 |
| D Score | 0.950 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3243 |
| Chain | QK / 3 |
| Non-redundant | True |
| Interacting RNA chains | D/3 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | D/3: rRNA |
| RNA family global | rRNA |
| Volume | 400.28 Å3 |
| Hydrophobicity | 0.694 |
| Hydrophilicity | 1.065 |
| Buriedness | 0.811 |
| Don/acc character | 1.593 |
| SiteScore | 1.226 |
| D Score | 1.079 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3251 |
| Chain | YK / 3 |
| Non-redundant | True |
| Interacting RNA chains | D/3 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | D/3: rRNA |
| RNA family global | rRNA |
| Volume | 706.24 Å3 |
| Hydrophobicity | 0.485 |
| Hydrophilicity | 1.126 |
| Buriedness | 0.758 |
| Don/acc character | 1.774 |
| SiteScore | 1.190 |
| D Score | 1.028 |
| Kd | — |
| Compound | SPM |
| Residue | . / 303 |
| Chain | FP / b |
| Non-redundant | True |
| Interacting RNA chains | D/3 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/3: rRNA |
| RNA family global | rRNA |
| Volume | 404.40 Å3 |
| Hydrophobicity | 0.287 |
| Hydrophilicity | 1.117 |
| Buriedness | 0.853 |
| Don/acc character | 0.971 |
| SiteScore | 1.070 |
| D Score | 1.045 |
| Kd | — |