HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8p7x

System information

Experimental technique Electron Microscopy
Experimental resolution 3.03
System mass 2369.67 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Mycoplasmoides
RCSB PDB Entry 8p7x
Reference Xue Liang, Spahn Christian M. T., Schacherl Magdalena, Mahamid Julia. . Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells Nature Structural & Molecular Biology

Compound CLM
Residue . / 3001
Chain HB / 3
Non-redundant True
Interacting RNA chains D/3
Volume 640.38 Å3
Hydrophobicity 0.603
Hydrophilicity 1.120
Buriedness 0.804
Don/acc character 1.034
SiteScore 1.221
D Score 1.057

Compound SPM
Residue . / 3226
Chain YJ / 3
Non-redundant True
Interacting RNA chains D/3
Volume 695.60 Å3
Hydrophobicity 0.452
Hydrophilicity 1.425
Buriedness 0.821
Don/acc character 0.904
SiteScore 1.082
D Score 0.968

Compound SPM
Residue . / 3240
Chain MK / 3
Non-redundant True
Interacting RNA chains D/3
Volume 399.60 Å3
Hydrophobicity 0.691
Hydrophilicity 1.039
Buriedness 0.807
Don/acc character 1.444
SiteScore 1.223
D Score 1.086

Compound SPM
Residue . / 3248
Chain UK / 3
Non-redundant True
Interacting RNA chains D/3
Volume 704.87 Å3
Hydrophobicity 0.362
Hydrophilicity 1.194
Buriedness 0.752
Don/acc character 1.263
SiteScore 1.186
D Score 1.002

Compound SPM
Residue . / 303
Chain CP / b
Non-redundant True
Interacting RNA chains D/3
Volume 627.00 Å3
Hydrophobicity 0.167
Hydrophilicity 1.104
Buriedness 0.836
Don/acc character 1.188
SiteScore 1.092
D Score 1.082