Harnessing RIBOnucleic acid - Small molecules Structures
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Cryo-EM structure of NSUN2-tRNAlys-SAM
SM: SAM
Cryo-EM structure of NSUN2-tRNATyr-SAM
Cryo-EM structure of NSUN2-pre-tRNALeu-SAM
pre-miR-6074 internal loop in complex with amiloride (Form 1)
SM: AMR
pre-miR-6074 internal loop in complex with amiloride (Form 2)
SM: AMR AMR
CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE
SM: SPM
SARS-CoV-2 polymerase with incorporated and pre-incorporated AT-9052-Sp
SM: A1ME1
Structure of the Chlamydomonas reinhardtii chlororibosome with P-site tRNA
SM: CLM
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
SM: SCM
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA
Structure of Yeast RNA polymerase II elongation complex with NTP-state-III
SM: GTP
Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative
SM: NMY NMY NMY NMY
Class I GTP aptamer
Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.
SM: JS5 JS5
Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site
SM: JS4 JS4
Crystal Structure of E. coli 5-methyluridine methyltransferase RumA in complex with ribosomal RNA substrate and S-adenosylhomocysteine.
SM: SAH SAH
Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation and a post- transfer editing substrate analogue
SM: 2AD 2AD
Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand
SM: TPP TPP
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
SM: ATP
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS
SM: GSU GSU
Complex structure of CCA-adding enzyme with tRNAminiDC and CTP
SM: CTP
Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
Complex structure of CCA-adding enzyme, mini-DCC and CTP
2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol
RNA polymerase II elongation complex at 5 mM Mg2+ with GTP
RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP
SM: G2P
Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin
SM: RTP
Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP
SM: UTP
Complex between Kanamycin A and the 16S-Rrna A Site.
SM: KAN KAN KAN
Complex between Lividomycin A and the 16S-Rrna A Site
SM: LIV LIV
Complex Between Gentamicin C1A and the 16S-RRNA A-Site
SM: LLL LLL
Complex Between Neomycin B and the 16S-RRNA A-Site
SM: NMY NMY
Complex Between Ribostamycin and the 16S-RRNA A-Site
SM: RIO RIO RIO RIO
Complex Between Neamine and the 16S-RRNA A-Site
SM: XXX
A-site RNA in complex with neamine
Asite RNA + designer antibiotic
SM: AB9
SM: AB6
30S ribosome + designer antibiotic
SM: AB9 D2C
HIV-1 DIS kissing-loop in complex with neamine
SM: XXX XXX
HIV-1 DIS kissing-loop in complex with Neomycin
HIV-1 DIS kissing-loop in complex with ribostamycin
HIV-1 DIS kissing-loop in complex with lividomycin
Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin
SM: AM2 AM2
Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
SM: MES MES
Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
Structure of the S-adenosylmethionine riboswitch mRNA regulatory element
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
SM: G6P
Crystal structure of kasugamycin bound to the 30S ribosomal subunit
SM: KSG KSG
Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions
SM: TPP
Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions
Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate
SM: TPS
Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine
SM: BFT
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8
