Complex 2bh2
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.15 |
| System mass | 121.46 kDa |
| Deposition year | 2005 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 2bh2 |
| Reference | Lee Tom T., Agarwalla Sanjay, Stroud Robert M.. 2005. A Unique RNA Fold in the RumA-RNA-Cofactor Ternary Complex Contributes to Substrate Selectivity and Enzymatic Function Cell |
| Equivalence Class |
NR_all_03525.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAH |
| Residue | . / 500 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/C: rRNA |
| RNA family global | rRNA |
| Volume | 515.19 Å3 |
| Hydrophobicity | 0.451 |
| Hydrophilicity | 1.456 |
| Buriedness | 0.870 |
| Don/acc character | 0.672 |
| SiteScore | 1.115 |
| D Score | 0.988 |
| Kd | — |
| Compound | SAH |
| Residue | . / 500 |
| Chain | G / B |
| Non-redundant | False |
| Interacting RNA chains | D/D |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/D: rRNA |
| RNA family global | rRNA |
| Volume | 392.39 Å3 |
| Hydrophobicity | 0.837 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.843 |
| Don/acc character | 0.865 |
| SiteScore | 1.097 |
| D Score | 1.050 |
| Kd | — |