HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 1yrj

System information

Experimental technique X-ray
Experimental resolution 2.70
System mass 15.85 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 1yrj
Reference Han Qing, Zhao Qiang, Fish Sarah, Simonsen Klaus B., Vourloumis Dionisios, Froelich Jamie M., Wall Daniel, Hermann Thomas. . Molecular Recognition by Glycoside Pseudo Base Pairs and Triples in an Apramycin–RNA Complex Angewandte Chemie International Edition

Compound AM2
Residue . / 151
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 119.71 Å3
Hydrophobicity 0.226
Hydrophilicity 0.872
Buriedness 0.577
Don/acc character 2.631
SiteScore 0.694
D Score 0.671

Compound AM2
Residue . / 150
Chain E / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 348.49 Å3
Hydrophobicity 0.104
Hydrophilicity 1.056
Buriedness 0.632
Don/acc character 1.775
SiteScore 0.890
D Score 0.891