HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 1yrj

System information

Experimental technique X-ray
Experimental resolution 2.70
System mass 15.85 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 1yrj
Reference Han Qing, Zhao Qiang, Fish Sarah, Simonsen Klaus B., Vourloumis Dionisios, Froelich Jamie M., Wall Daniel, Hermann Thomas. . Molecular Recognition by Glycoside Pseudo Base Pairs and Triples in an Apramycin–RNA Complex Angewandte Chemie International Edition

Compound AM2
Residue . / 151
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 115.93 Å3
Hydrophobicity 0.312
Hydrophilicity 0.785
Buriedness 0.581
Don/acc character 0.582
SiteScore 0.696
D Score 0.680

Compound AM2
Residue . / 150
Chain E / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 340.94 Å3
Hydrophobicity 0.155
Hydrophilicity 1.046
Buriedness 0.637
Don/acc character 1.622
SiteScore 0.865
D Score 0.861