HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2a04

System information

Experimental technique X-ray
Experimental resolution 2.95
System mass 21.08 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2a04
Reference Zhao Fang, Zhao Qiang, Blount Kenneth F., Han Qing, Tor Yitzhak, Hermann Thomas. . Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative Angewandte Chemie International Edition

Compound NMY
Residue . / 17
Chain E / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 59.34 Å3
Hydrophobicity 0.210
Hydrophilicity 0.861
Buriedness 0.554
Don/acc character 2.714
SiteScore 0.763
D Score 0.575

Compound NMY
Residue . / 18
Chain F / A
Non-redundant True
Interacting RNA chains A/A
Volume 42.53 Å3
Hydrophobicity 0.005
Hydrophilicity 0.657
Buriedness 0.409
Don/acc character 4.275
SiteScore 1.031
D Score 0.972

Compound NMY
Residue . / 1
Chain H / C
Non-redundant False
Interacting RNA chains C/C, D/D
Volume 53.17 Å3
Hydrophobicity 0.091
Hydrophilicity 0.900
Buriedness 0.556
Don/acc character 3.344
SiteScore 0.708
D Score 0.501

Compound NMY
Residue . / 17
Chain I / C
Non-redundant False
Interacting RNA chains C/C
Volume 96.38 Å3
Hydrophobicity 0.010
Hydrophilicity 0.615
Buriedness 0.488
Don/acc character 3.338
SiteScore 1.091
D Score 1.032