HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2a04

System information

Experimental technique X-ray
Experimental resolution 2.95
System mass 21.08 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2a04
Reference Zhao Fang, Zhao Qiang, Blount Kenneth F., Han Qing, Tor Yitzhak, Hermann Thomas. . Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative Angewandte Chemie International Edition

Compound NMY
Residue . / 17
Chain E / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 61.05 Å3
Hydrophobicity 0.164
Hydrophilicity 0.864
Buriedness 0.556
Don/acc character 3.366
SiteScore 0.633
D Score 0.600

Compound NMY
Residue . / 18
Chain F / A
Non-redundant True
Interacting RNA chains A/A
Volume 93.64 Å3
Hydrophobicity 0.081
Hydrophilicity 1.265
Buriedness 0.696
Don/acc character 0.956
SiteScore 0.509
D Score 0.317

Compound NMY
Residue . / 1
Chain H / C
Non-redundant True
Interacting RNA chains C/C, D/D
Volume 183.50 Å3
Hydrophobicity 0.017
Hydrophilicity 1.099
Buriedness 0.660
Don/acc character 2.226
SiteScore 0.616
D Score 0.517

Compound NMY
Residue . / 17
Chain I / C
Non-redundant True
Interacting RNA chains B/B, A/A, C/C
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -