Complex 2cv2
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.69 |
| System mass | 157.26 kDa |
| Deposition year | 2005 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 2cv2 |
| Reference | Sekine Shun-ichi, Shichiri Mika, Bernier Stéphane, Chênevert Robert, Lapointe Jacques, Yokoyama Shigeyuki. 2006. Structural Bases of Transfer RNA-Dependent Amino Acid Recognition and Activation by Glutamyl-tRNA Synthetase Structure |
| Equivalence Class |
NR_all_29085.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GSU |
| Residue | . / 601 |
| Chain | H / A |
| Non-redundant | True |
| Interacting RNA chains | A/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/C: tRNA |
| RNA family global | tRNA |
| Volume | 563.89 Å3 |
| Hydrophobicity | 0.841 |
| Hydrophilicity | 1.093 |
| Buriedness | 0.855 |
| Don/acc character | 0.531 |
| SiteScore | 1.105 |
| D Score | 1.097 |
| Kd | — |
| Compound | GSU |
| Residue | . / 602 |
| Chain | J / B |
| Non-redundant | True |
| Interacting RNA chains | B/D |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/D: tRNA |
| RNA family global | tRNA |
| Volume | 600.59 Å3 |
| Hydrophobicity | 0.836 |
| Hydrophilicity | 1.100 |
| Buriedness | 0.807 |
| Don/acc character | 0.627 |
| SiteScore | 1.073 |
| D Score | 1.066 |
| Kd | — |