HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2esj

System information

Experimental technique X-ray
Experimental resolution 2.20
System mass 15.62 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2esj
Reference Francois B.. . Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding Nucleic Acids Research

Compound LIV
Residue . / 50
Chain C / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 188.31 Å3
Hydrophobicity 0.010
Hydrophilicity 1.110
Buriedness 0.643
Don/acc character 1.616
SiteScore 0.604
D Score 0.503

Compound LIV
Residue . / 51
Chain D / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 135.83 Å3
Hydrophobicity 0.107
Hydrophilicity 0.845
Buriedness 0.567
Don/acc character 1.651
SiteScore 0.822
D Score 0.840