HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2esj

System information

Experimental technique X-ray
Experimental resolution 2.20
System mass 15.62 kDa
Deposition year 2005
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 2esj
Reference Francois B.. . Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding Nucleic Acids Research

Compound LIV
Residue . / 50
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 71.69 Å3
Hydrophobicity 0.251
Hydrophilicity 0.963
Buriedness 0.598
Don/acc character 0.927
SiteScore 0.630
D Score 0.577

Compound LIV
Residue . / 51
Chain D / B
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 110.79 Å3
Hydrophobicity 0.188
Hydrophilicity 0.853
Buriedness 0.574
Don/acc character 1.007
SiteScore 0.816
D Score 0.830