Complex 2esi
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 16.16 kDa |
| Deposition year | 2005 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 2esi |
| Reference | Francois B.. . Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding Nucleic Acids Research |
| Equivalence Class |
NR_all_71199.7
BGSU version: 4.48 |
| Compound | KAN |
| Residue | . / 51 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 651.01 Å3 |
| Hydrophobicity | 0.126 |
| Hydrophilicity | 1.071 |
| Buriedness | 0.667 |
| Don/acc character | 1.947 |
| SiteScore | 1.129 |
| D Score | 0.991 |
| Kd | — |
| Compound | KAN |
| Residue | . / 50 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 102.90 Å3 |
| Hydrophobicity | 0.086 |
| Hydrophilicity | 0.872 |
| Buriedness | 0.566 |
| Don/acc character | 2.668 |
| SiteScore | 0.825 |
| D Score | 0.650 |
| Kd | — |
| Compound | KAN |
| Residue | . / 52 |
| Chain | E / B |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 172.87 Å3 |
| Hydrophobicity | 0.041 |
| Hydrophilicity | 1.052 |
| Buriedness | 0.663 |
| Don/acc character | 1.482 |
| SiteScore | 0.814 |
| D Score | 0.595 |
| Kd | — |