Complex 1z58
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.80 |
| System mass | 934.32 kDa |
| Deposition year | 2005 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Deinococcus |
| RCSB PDB Entry | 1z58 |
| Reference | Amit Maya, Berisio Rita, Baram David, Harms Joerg, Bashan Anat, Yonath Ada. 2005. A crevice adjoining the ribosome tunnel: Hints for cotranslational folding FEBS Letters |
| Equivalence Class |
NR_all_88987.11
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | RAP |
| Residue | . / 2881 |
| Chain | B / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 417.09 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 1.311 |
| Buriedness | 0.779 |
| Don/acc character | 2.003 |
| SiteScore | 1.082 |
| D Score | 0.980 |
| Kd | — |