Harnessing RIBOnucleic acid - Small molecules Structures
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Selective Small Molecule Inhibition of the FMN Riboswitch
SM: 51B
PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+
SM: PRF PRF PRF PRF
Cooperativity and Downstream Binding in RNA Replication
SM: 5GP 5GP 5GP 5GP
SM: 5GP 5GP 5GP 5GP 5GP 5GP 5GP 5GP
SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU
SM: SAM
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU
RNA primer-template complex with 2-methylimidazole-activated monomer analogue
SM: PZG PZG
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-2 binding sites
SM: PZG PZG PZG PZG PZG PZG PZG PZG
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites
Structure of a 5-hydroxytryptophan aptamer
SM: 4PQ
RNA 15mer duplex binding with PZG monomer
SM: PZG PZG PZG PZG
SM: 6YG
Self-complimentary RNA 15mer binding with GMP monomers
Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa.
SM: GTP
iSpinach aptamer
SM: 1TU SPM
Structure of a guanidine-I riboswitch from S. acidophilus
SM: SPK
RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G
SM: 86S 86S
RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G
SM: GP3 GP3
RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand
SM: 86P 86P 86P 86P
RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue
SM: 8OS
RNA duplex with 2-MeImpG analogue bound-one binding site
SM: 8OS 8OS
RNA duplex with 2-MeImpG analogue bound-2 binding sites
SM: 8OS 8OS 8OS 8OS
RNA duplex with 2-MeImpG analogue bound-3 binding sites
RNA hairpin structure containing 2-MeImpG analogue bound
Structure of S-GNA dodecamer
SM: SPM
Co-crystal structure of the fluorogenic RNA Mango
SM: 74G 74G
RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue
Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
SM: SPM SPM SPM SPM SPM
Guanidine-II riboswitch P2 hairpin dimer with 5-bromoU substitution from Pseudomonas aeruginosa
SM: SPM SPM SPM SPM
Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycin
SM: PAR
Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)
SM: MYC MYC
Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418
SM: GET GET GET GET
Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin
SM: FSJ
Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin
Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)
SM: GET
Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticin
SM: GET GET
RNA-activated 2-AIpG monomer complex, 30 min soaking
SM: EQ1 EQ1
RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G
SM: GP3
Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3
SM: DKM
Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO1-Biotin
SM: EKJ EKJ EKJ
Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO3-Biotin
SM: EKM EKM
Crystal Structure of the Mango-II-A22U Fluorescent Aptamer Bound to TO1-Biotin
RNA-dGMP complex with Mg ion
SM: DGP DGP DGP DGP
RNA-imidazolium-bridged intermediate complex, 4h soaking
RNA-activated 2-AIpG monomer complex, 5 min soaking
SM: EQ4 EQ4 EQ4 EQ4
RNA-activated 2-AIpG monomer complex, 15 min soaking
RNA-activated 2-AIpG monomer complex, 1h soaking
RNA-activated 2-AIpG monomer, 1.5h soaking
SM: EQ1
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8
