HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5vjb

System information

Experimental technique X-ray
Experimental resolution 2.10
System mass 22.05 kDa
Deposition year 2017
Molecule type RNA
# RNA entities 1
Organism Pseudomonas
RCSB PDB Entry 5vjb
Reference Reiss Caroline W., Strobel Scott A.. . Structural basis for ligand binding to the guanidine-II riboswitch RNA

Compound SPM
Residue . / 102
Chain M / D
Non-redundant False
Interacting RNA chains D/D
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 102
Chain F / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 102
Chain H / B
Non-redundant False
Interacting RNA chains B/B
Volume 86.44 Å3
Hydrophobicity 0.011
Hydrophilicity 1.196
Buriedness 0.622
Don/acc character 1.631
SiteScore 0.668
D Score 0.371

Compound SPM
Residue . / 102
Chain K / C
Non-redundant False
Interacting RNA chains C/C
Volume 106.33 Å3
Hydrophobicity 0.031
Hydrophilicity 0.984
Buriedness 0.572
Don/acc character 4.986
SiteScore 0.695
D Score 0.473