HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5hbx

System information

Experimental technique X-ray
Experimental resolution 1.70
System mass 21.35 kDa
Deposition year 2016
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 5hbx
Reference Zhang Wen, Tam Chun Pong, Wang Jiawei, Szostak Jack W.. . Unusual Base-Pairing Interactions in Monomer–Template Complexes ACS Central Science
Equivalence Class NR_all_49339.4
BGSU version: 4.48

Compound PZG
Residue . / 102
Chain H / B
Non-redundant True
Interacting RNA chains B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains B/B: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound PZG
Residue . / 101
Chain E / A
Non-redundant True
Interacting RNA chains A/A, B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 58.65 Å3
Hydrophobicity 0.981
Hydrophilicity 0.710
Buriedness 0.533
Don/acc character 3.753
SiteScore 0.540
D Score 0.498
Kd

Compound PZG
Residue . / 102
Chain F / A
Non-redundant True
Interacting RNA chains A/A, B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound PZG
Residue . / 101
Chain G / B
Non-redundant True
Interacting RNA chains A/A, B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 24.70 Å3
Hydrophobicity 0.700
Hydrophilicity 0.737
Buriedness 0.536
Don/acc character 3.301
SiteScore 0.510
D Score 0.457
Kd

Compound PZG
Residue . / 101
Chain I / C
Non-redundant True
Interacting RNA chains D/D, C/C
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains C/C: synthetic construct, D/D: synthetic construct
RNA family global synthetic construct
Volume 54.54 Å3
Hydrophobicity 0.804
Hydrophilicity 0.828
Buriedness 0.528
Don/acc character 2.981
SiteScore 0.514
D Score 0.457
Kd

Compound PZG
Residue . / 102
Chain J / C
Non-redundant False
Interacting RNA chains D/D, C/C
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains C/C: synthetic construct, D/D: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound PZG
Residue . / 101
Chain K / D
Non-redundant True
Interacting RNA chains D/D, C/C
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains C/C: synthetic construct, D/D: synthetic construct
RNA family global synthetic construct
Volume 23.67 Å3
Hydrophobicity 0.452
Hydrophilicity 0.702
Buriedness 0.467
Don/acc character 2.130
SiteScore 0.572
D Score 0.558
Kd

Compound PZG
Residue . / 102
Chain L / D
Non-redundant True
Interacting RNA chains D/D
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains D/D: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd