HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6c8d

System information

Experimental technique X-ray
Experimental resolution 1.92
System mass 10.63 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 6c8d
Reference Zhang Wen, Walton Travis, Li Li, Szostak Jack W. . Crystallographic observation of nonenzymatic RNA primer extension eLife
Equivalence Class NR_all_01949.9
BGSU version: 4.49

Compound DGP
Residue . / 101
Chain C / A
Non-redundant False
Interacting RNA chains B/B, A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 21.61 Å3
Hydrophobicity 0.434
Hydrophilicity 0.790
Buriedness 0.488
Don/acc character 1.364
SiteScore 0.519
D Score 0.476
Kd —

Compound DGP
Residue . / 102
Chain D / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct
RNA family global synthetic construct
Volume 24.01 Å3
Hydrophobicity 0.000
Hydrophilicity 1.161
Buriedness 0.347
Don/acc character 0.927
SiteScore 0.398
D Score 0.299
Kd —

Compound DGP
Residue . / 101
Chain J / B
Non-redundant False
Interacting RNA chains B/B, A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 21.95 Å3
Hydrophobicity 0.457
Hydrophilicity 0.770
Buriedness 0.479
Don/acc character 2.182
SiteScore 0.524
D Score 0.487
Kd —

Compound DGP
Residue . / 102
Chain K / B
Non-redundant True
Interacting RNA chains B/B
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains B/B: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —