Complex 5v0j
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.50 |
| System mass | 10.70 kDa |
| Deposition year | 2017 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 5v0j |
| Reference | Zhang Wen, Tam Chun Pong, Zhou Lijun, Oh Seung Soo, Wang Jiawei, Szostak Jack W.. . Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide Journal of the American Chemical Society |
| Equivalence Class |
NR_all_49339.4
BGSU version: 4.48 |
| Compound | 8OS |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 46.31 Å3 |
| Hydrophobicity | 0.396 |
| Hydrophilicity | 0.741 |
| Buriedness | 0.474 |
| Don/acc character | 3.959 |
| SiteScore | 0.468 |
| D Score | 0.419 |
| Kd | — |
| Compound | 8OS |
| Residue | . / 102 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | 8OS |
| Residue | . / 102 |
| Chain | F / B |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 36.36 Å3 |
| Hydrophobicity | 0.675 |
| Hydrophilicity | 0.586 |
| Buriedness | 0.484 |
| Don/acc character | 1.873 |
| SiteScore | 0.626 |
| D Score | 0.631 |
| Kd | — |
| Compound | 8OS |
| Residue | . / 103 |
| Chain | G / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |