HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5krg

System information

Experimental technique X-ray
Experimental resolution 1.60
System mass 21.14 kDa
Deposition year 2016
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 5krg
Reference Zhang Wen, Tam Chun Pong, Wang Jiawei, Szostak Jack W.. . Unusual Base-Pairing Interactions in Monomer–Template Complexes ACS Central Science
Equivalence Class NR_all_16232.7
BGSU version: 4.48

Compound PZG
Residue . / 101
Chain E / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: synthetic construct
RNA family global synthetic construct
Volume 24.35 Å3
Hydrophobicity 0.190
Hydrophilicity 0.796
Buriedness 0.455
Don/acc character 1.870
SiteScore 0.546
D Score 0.520
Kd —

Compound PZG
Residue . / 102
Chain F / A
Non-redundant True
Interacting RNA chains B/B, A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —

Compound PZG
Residue . / 101
Chain G / C
Non-redundant True
Interacting RNA chains C/C
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains C/C: synthetic construct
RNA family global synthetic construct
Volume 28.47 Å3
Hydrophobicity 0.254
Hydrophilicity 0.801
Buriedness 0.476
Don/acc character 2.737
SiteScore 0.545
D Score 0.513
Kd —

Compound PZG
Residue . / 101
Chain H / D
Non-redundant True
Interacting RNA chains C/C, D/D
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains C/C: synthetic construct, D/D: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —