Complex 5zei

Legend

Pocket colors by molecule type

RNA

Protein

DNA

These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).

System information

Experimental technique	X-ray
Experimental resolution	2.10
System mass	14.81 kDa
Deposition year	2018
Molecule type	RNA
# RNA entities	1
Organism	N/A
RCSB PDB Entry	5zei
Reference	Kanazawa Hiroki, Baba Fumika, Koganei Mai, Kondo Jiro. 2017. A structural basis for the antibiotic resistance conferred by an N1-methylation of A1408 in 16S rRNA Nucleic Acids Research
Equivalence Class	NR_all_71199.7 BGSU version: 4.52

Pockets List

Legend

Cell colors for SiteScore and D Score:

Favourable

Intermediate

Unfavourable

Not available

Score	Threshold	Meaning
SiteScore	< 0.8	Non-drug binding site
SiteScore	0.8 – 1.0	Potential drug binding site
SiteScore	> 1.0	Promising binding site
D Score	< 0.83	Undruggable
D Score	0.83 – 0.98	Difficult
D Score	> 0.98	Druggable

Tick a pocket below to highlight it in the 3D structure above.

Pocket 1

Compound	GET
Residue	. / 101
Chain	C / A
Non-redundant	False
Interacting RNA chains	A/A, B/B
RNA environment detailled	RNA-only
RNA environment global	RNA
RNA family chains	A/A: rRNA, B/B: rRNA
RNA family global	rRNA
Volume	45.62 Å³
Hydrophobicity	0.377
Hydrophilicity	0.752
Buriedness	0.557
Don/acc character	2.956
SiteScore	0.698
D Score	0.499
Kd	—

Pocket 2

Compound	GET
Residue	. / 101
Chain	D / B
Non-redundant	False
Interacting RNA chains	A/A, B/B
RNA environment detailled	RNA-only
RNA environment global	RNA
RNA family chains	A/A: rRNA, B/B: rRNA
RNA family global	rRNA
Volume	81.63 Å³
Hydrophobicity	0.203
Hydrophilicity	0.813
Buriedness	0.573
Don/acc character	2.455
SiteScore	0.779
D Score	0.594
Kd	—