Complex 6c64
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 35.49 kDa |
| Deposition year | 2018 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6c64 |
| Reference | Trachman Robert J., Abdolahzadeh Amir, Andreoni Alessio, Cojocaru Razvan, Knutson Jay R., Ryckelynck Michael, Unrau Peter J., Ferré-D’Amaré Adrian R.. . Crystal Structures of the Mango-II RNA Aptamer Reveal Heterogeneous Fluorophore Binding and Guide Engineering of Variants with Improved Selectivity and Brightness Biochemistry |
| Equivalence Class |
NR_all_82829.3
BGSU version: 4.48 |
| Compound | EKM |
| Residue | . / 101 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 302.18 Å3 |
| Hydrophobicity | 0.817 |
| Hydrophilicity | 0.685 |
| Buriedness | 0.612 |
| Don/acc character | 3.541 |
| SiteScore | 1.161 |
| D Score | 1.084 |
| Kd | 1.4nM |
| Compound | EKM |
| Residue | . / 101 |
| Chain | H / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 263.77 Å3 |
| Hydrophobicity | 0.765 |
| Hydrophilicity | 0.686 |
| Buriedness | 0.580 |
| Don/acc character | 3.114 |
| SiteScore | 1.140 |
| D Score | 1.064 |
| Kd | 1.4nM |