Complex 5l00
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.25 |
| System mass | 20.98 kDa |
| Deposition year | 2016 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 5l00 |
| Reference | Zhang Wen, Tam Chun Pong, Wang Jiawei, Szostak Jack W.. 2016. Unusual Base-Pairing Interactions in Monomer–Template Complexes ACS Central Science |
| Equivalence Class |
NR_all_16232.7
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 101 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | 5GP |
| Residue | . / 102 |
| Chain | F / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | 5GP |
| Residue | . / 102 |
| Chain | J / C |
| Non-redundant | True |
| Interacting RNA chains | C/C, D/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/C: synthetic construct, D/D: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 32.59 Å3 |
| Hydrophobicity | 0.398 |
| Hydrophilicity | 0.863 |
| Buriedness | 0.485 |
| Don/acc character | 2.349 |
| SiteScore | 0.533 |
| D Score | 0.489 |
| Kd | — |
| Compound | 5GP |
| Residue | . / 103 |
| Chain | K / C |
| Non-redundant | True |
| Interacting RNA chains | C/C, D/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/C: synthetic construct, D/D: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |