HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6c8i

System information

Experimental technique X-ray
Experimental resolution 1.77
System mass 10.79 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 6c8i
Reference Zhang Wen, Walton Travis, Li Li, Szostak Jack W. . Crystallographic observation of nonenzymatic RNA primer extension eLife
Equivalence Class NR_all_01949.9
BGSU version: 4.48

Compound EQ4
Residue . / 103
Chain E / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —

Compound EQ4
Residue . / 102
Chain D / A
Non-redundant True
Interacting RNA chains B/B, A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 77.52 Å3
Hydrophobicity 0.544
Hydrophilicity 0.795
Buriedness 0.514
Don/acc character 2.906
SiteScore 0.637
D Score 0.621
Kd —

Compound EQ4
Residue . / 102
Chain G / B
Non-redundant True
Interacting RNA chains B/B, A/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 21.27 Å3
Hydrophobicity 0.641
Hydrophilicity 0.571
Buriedness 0.537
Don/acc character 1.412
SiteScore 0.482
D Score 0.434
Kd —

Compound EQ4
Residue . / 103
Chain H / B
Non-redundant True
Interacting RNA chains B/B
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains B/B: synthetic construct
RNA family global synthetic construct
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd —