HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5d5l

System information

Experimental technique X-ray
Experimental resolution 2.50
System mass 104.74 kDa
Deposition year 2015
Molecule type RNA
# RNA entities 1
Organism Lacticaseibacillus
RCSB PDB Entry 5d5l

Compound PRF
Residue . / 117
Chain U / A
Non-redundant False
Interacting RNA chains A/A
Volume 97.07 Å3
Hydrophobicity 0.809
Hydrophilicity 0.896
Buriedness 0.634
Don/acc character 1.962
SiteScore 0.660
D Score 0.612

Compound PRF
Residue . / 109
Chain JA / B
Non-redundant False
Interacting RNA chains B/B
Volume 98.78 Å3
Hydrophobicity 0.562
Hydrophilicity 0.867
Buriedness 0.607
Don/acc character 1.401
SiteScore 0.667
D Score 0.630

Compound PRF
Residue . / 104
Chain QA / C
Non-redundant False
Interacting RNA chains C/C
Volume 87.12 Å3
Hydrophobicity 0.532
Hydrophilicity 1.014
Buriedness 0.617
Don/acc character 1.274
SiteScore 0.658
D Score 0.604

Compound PRF
Residue . / 106
Chain ZA / D
Non-redundant False
Interacting RNA chains D/D
Volume 86.09 Å3
Hydrophobicity 0.737
Hydrophilicity 0.919
Buriedness 0.630
Don/acc character 1.342
SiteScore 0.660
D Score 0.610