HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5dhc

System information

Experimental technique X-ray
Experimental resolution 1.55
System mass 21.21 kDa
Deposition year 2015
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 5dhc
Reference Zhang Wen, Tam Chun Pong, Wang Jiawei, Szostak Jack W.. . Unusual Base-Pairing Interactions in Monomer–Template Complexes ACS Central Science

Compound 5GP
Residue . / 104
Chain H / A
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 34.30 Å3
Hydrophobicity 1.101
Hydrophilicity 0.702
Buriedness 0.544
Don/acc character 3.075
SiteScore 0.503
D Score 0.449

Compound 5GP
Residue . / 105
Chain I / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 5GP
Residue . / 105
Chain N / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 27.44 Å3
Hydrophobicity 0.414
Hydrophilicity 0.874
Buriedness 0.505
Don/acc character 2.659
SiteScore 0.481
D Score 0.417

Compound 5GP
Residue . / 106
Chain O / B
Non-redundant True
Interacting RNA chains B/B
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 5GP
Residue . / 105
Chain T / C
Non-redundant True
Interacting RNA chains C/C, D/D
Volume 41.16 Å3
Hydrophobicity 0.732
Hydrophilicity 0.684
Buriedness 0.490
Don/acc character 2.652
SiteScore 0.532
D Score 0.502

Compound 5GP
Residue . / 106
Chain U / C
Non-redundant True
Interacting RNA chains C/C
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 5GP
Residue . / 105
Chain Z / D
Non-redundant True
Interacting RNA chains C/C, D/D
Volume 25.04 Å3
Hydrophobicity 0.247
Hydrophilicity 0.771
Buriedness 0.477
Don/acc character 2.433
SiteScore 0.530
D Score 0.496

Compound 5GP
Residue . / 106
Chain AA / D
Non-redundant True
Interacting RNA chains D/D
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -