HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5vcf

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 11.30 kDa
Deposition year 2017
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 5vcf
Reference Zhang Wen, Tam Chun Pong, Zhou Lijun, Oh Seung Soo, Wang Jiawei, Szostak Jack W.. . Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide Journal of the American Chemical Society
Equivalence Class NR_all_95948.3
BGSU version: 4.48

Compound 8OS
Residue . / 101
Chain C / A
Non-redundant False
Interacting RNA chains B/B, A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: synthetic construct, B/B: synthetic construct
RNA family global synthetic construct
Volume 24.70 Å3
Hydrophobicity 0.501
Hydrophilicity 0.809
Buriedness 0.526
Don/acc character 2.024
SiteScore 0.621
D Score 0.404
Kd