Complex 5t83
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.71 |
| System mass | 32.72 kDa |
| Deposition year | 2016 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Sulfobacillus |
| RCSB PDB Entry | 5t83 |
| Reference | Reiss Caroline W., Xiong Yong, Strobel Scott A.. 2017. Structural Basis for Ligand Binding to the Guanidine-I Riboswitch Structure |
| Equivalence Class |
NR_all_91539.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SPK |
| Residue | . / 110 |
| Chain | K / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 350.55 Å3 |
| Hydrophobicity | 0.064 |
| Hydrophilicity | 1.362 |
| Buriedness | 0.699 |
| Don/acc character | 1.703 |
| SiteScore | 1.151 |
| D Score | 0.916 |
| Kd | — |