Harnessing RIBOnucleic acid - Small molecules Structures
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Complex 1 30S-IF1-IF2-IF3-GE81112
SM: A1IC4
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Complex 3 (BODY) 30S-tRNA-GE81112
Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
SM: SAH
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
SM: EPE TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
SM: A1IWA
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
SM: EPE TER
Crystal structure of the Class V GTP aptamer in complex with GTP
SM: GTP GTP GTP GTP
Crystal structure of the Class V (UU) GTP aptamer variant in complex with GTP
SM: GTP
Crystal structure of the Class V (G61A) GTP aptamer variant in complex with GTP
Solution NMR structure of the synthetic tobramycin riboswitch in complex with tobramycin
SM: TOY
CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
SM: HYG
High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
SM: SPM SPM
50S subunit of P. gingivalis ribosome with Lefamulin
SM: 62B
Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
SM: A1I09
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Crystal structure containing UGGAA/UGGAA motif interacting with NCD molecule
SM: B2R B2R B2R
RNA duplex containing UGGAA/UGGAA motif interacting with NCD molecule
SM: B2R B2R
The crystal structure of human m5C methyltransferase NSUN6 bound to its S-adenosyl-L-methionine analog and a NECTIN-2 3'-UTR RNA substrate
SM: SFG SFG
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT ESIDUES
SM: 53D
INTERACTION BETWEEN A FLUOROQUINOLONE DERIVATIVE KG022 AND RNAS: EFFECT OF BASE PAIRS 5' ADJACENT TO THE BULGE OUT RESIDUES
Crystal structure of B. subtilis Leucine tRNA with UAA anticodon
SM: SPM
Crystal structure of B. subtilis CspR complexed with sinefungin and cellularly expressed tRNA Leu
SM: SFG
pre-mir-125a internal loop in complex with G-clamp
SM: A1L3Y A1L3Y
Tetrahymena Ribozyme L-16 complex with small molecule inhibitor ZPT-084
SM: A1EA7
EF-G2 bound 70S ribosome complex of M. smegmatis
SM: PHE
Human RNA Polymerase III de novo transcribing complex 4 (TC4)
SM: 3AT GTP
Structure of human LINE-1 ORF2p with endogenous DNA and RNA/cDNA hybrid bound to dNTP and Mn2+
SM: DTP
Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth (K form)
Cryo-EM structure of Anabaena tRNA(Leu) precursor at Pre-1S state
SM: GMP
Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth (Na form)
Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in space (Na form)
Cryo-EM structure of the thermophile spliceosome (state ILS)
SM: M7M
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Crystal structure of RhoBAST aptamer in complex with TMR
SM: A1EI4
Cryo-EM structure of the dGTP bound DRT2-ncRNA complex
SM: DGT
Structural insights into the polymerase catalyzed FAD-capping of hepatitis C viral RNA
SM: CDP FAD
SM: FAD GDP
SM: C5P FAD
SM: GDP
Crystal structure of Guanine-II riboswitch in complex with 2'-deoxyguanosine
SM: GNG
Crystal structure of Guanine-II riboswitch in complex with guanosine
Crystal structure of the 2'-dG-III riboswitch bound to Guanosine
Crystal structure of the 2'-dG-III riboswitch bound to 2'-dG
Structure of arbekacin bound Escherichia coli 70S ribosome
SM: 84G 84G
Human 80S ribosome bound to small molecule SW393071
SM: A1BNL B3P
CryoEM Structure of the Candida albicans Group I Intron-GMP Complex
SM: 5GP
CryoEM Structure of the Candida albicans Group I Intron-Compound 11 Complex under Magnesium Condition
SM: A1BNU
CryoEM Structure of the Candida albicans Group I Intron-Compound 11 Complex under Calcium Condition
RlmR 23S rRNA methyltransferase from Thermus thermophilus in complex with methylated rRNA (Um2552) and S-adenosyl-L-homocysteine (SAH)
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
SM: ATP ATP
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
Mycobacterium smegmatis 70S ribosome with small molecule drug MK-7762
SM: A1BWO
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8