Complex 9j6p
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.49 |
| System mass | 15.30 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9j6p |
| Reference | Nagasawa Ryosuke, Onizuka Kazumitsu, Kawamura Karen, Tsuzuki Kosuke, Murase Hirotaka, Komatsu Kaoru R., Miyashita Emi, Saito Hirohide, Kondo Jiro, Nagatsugi Fumi. . Crystallographic analysis of G-clamp–RNA complex assisted by large scale RNA-binding profile Chemical Communications |
| Equivalence Class |
NR_all_08425.1
BGSU version: 4.49 |
| Compound | A1L3Y |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 457.91 Å3 |
| Hydrophobicity | 0.258 |
| Hydrophilicity | 0.941 |
| Buriedness | 0.640 |
| Don/acc character | 2.170 |
| SiteScore | 1.131 |
| D Score | 1.017 |
| Kd | — |
| Compound | A1L3Y |
| Residue | . / 101 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 79.23 Å3 |
| Hydrophobicity | 0.056 |
| Hydrophilicity | 1.252 |
| Buriedness | 0.559 |
| Don/acc character | 1.093 |
| SiteScore | 0.827 |
| D Score | 0.572 |
| Kd | — |