HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9k3v

System information

Experimental technique Electron Microscopy
Experimental resolution 3.50
System mass 1398.43 kDa
Deposition year 2024
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9k3v
Reference Wang Qianmin, Ren Yulei, Jin Qianwei, Chen Xizi, Xu Yanhui. . Structural insights into human Pol III transcription initiation in action Nature
Equivalence Class NR_all_61657.1
BGSU version: 4.49

Compound 3AT
Residue . / 1202
Chain DA / B
Non-redundant True
Interacting RNA chains Z/Z
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains Z/Z: unknown
RNA family global unknown
Volume 653.07 Å3
Hydrophobicity 0.656
Hydrophilicity 1.015
Buriedness 0.800
Don/acc character 1.034
SiteScore 1.074
D Score 1.089
Kd

Compound GTP
Residue . / 102
Chain KA / Z
Non-redundant True
Interacting RNA chains Z/Z
RNA environment detailled DNA, protein
RNA environment global RNA/DNA/Protein
RNA family chains Z/Z: unknown
RNA family global unknown
Volume 429.78 Å3
Hydrophobicity 0.143
Hydrophilicity 1.320
Buriedness 0.744
Don/acc character 1.082
SiteScore 1.031
D Score 0.956
Kd