HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9imb

System information

Experimental technique X-ray
Experimental resolution 2.90
System mass 119.64 kDa
Deposition year 2024
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9imb
Reference Zhong Fumei, Pu Tian, Hu Qian, Li Mingwei, Wang Lei, Wang Suman, Ruan Ke, Shi Yunyu, Sun Beicheng, Jiang Yiyang, Lv Mengqi. . NSUN6 inhibitor discovery guided by its mRNA substrate bound crystal structure Structure
Equivalence Class NR_all_27653.3
BGSU version: 4.48

Compound SFG
Residue . / 501
Chain E / B
Non-redundant True
Interacting RNA chains B/D
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains B/D: unknown
RNA family global unknown
Volume 712.07 Å3
Hydrophobicity 0.671
Hydrophilicity 1.244
Buriedness 0.854
Don/acc character 0.898
SiteScore 1.105
D Score 1.047
Kd

Compound SFG
Residue . / 501
Chain F / A
Non-redundant True
Interacting RNA chains D/C
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains D/C: unknown
RNA family global unknown
Volume 621.86 Å3
Hydrophobicity 0.575
Hydrophilicity 1.345
Buriedness 0.848
Don/acc character 0.904
SiteScore 1.101
D Score 1.010
Kd