Complex 9j5p
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.18 |
| System mass | 68.76 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Bacillus |
| RCSB PDB Entry | 9j5p |
| Reference | Yoo J, Lee Y, Cho G, Lim J, Kim J. 2025. Pending: 10.1093/nar/gkaf751 |
| Equivalence Class |
NR_all_62509.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SFG |
| Residue | . / 201 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: tRNA |
| RNA family global | tRNA |
| Volume | 216.43 Å3 |
| Hydrophobicity | 0.808 |
| Hydrophilicity | 1.198 |
| Buriedness | 0.875 |
| Don/acc character | 0.891 |
| SiteScore | 1.118 |
| D Score | 1.075 |
| Kd | — |