Complex 9mqs
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.10 |
| System mass | 107.41 kDa |
| Deposition year | 2025 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 9mqs |
| Reference | Liu Tianshuo, Xu Ling, Chung Kevin, Sisto Luke J., Hwang Jimin, Zhang Chengxin, Van Zandt Michael C., Pyle Anna Marie. 2025. Molecular insights into de novo small-molecule recognition by an intron RNA structure Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_71108.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 409 |
| Chain | J / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 397.19 Å3 |
| Hydrophobicity | 0.028 |
| Hydrophilicity | 1.180 |
| Buriedness | 0.725 |
| Don/acc character | 2.729 |
| SiteScore | 1.146 |
| D Score | 0.962 |
| Kd | — |