Complex 9k6h
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 166.11 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | Trichoplusia |
| RCSB PDB Entry | 9k6h |
| Reference | Jin Wenxing, Yu Cong, Zhang Yan, Cao Changchang, Xia Tianfan, Song Ge, Cai Zhaokui, Xue Yuanchao, Zhu Bing, Xu Rui-Ming. 2025. Mechanism of DNA targeting by human LINE-1 Science |
| Equivalence Class |
NR_all_05931.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | DTP |
| Residue | . / 1301 |
| Chain | F / A |
| Non-redundant | True |
| Interacting RNA chains | E/E |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | E/E: unknown |
| RNA family global | unknown |
| Volume | 554.63 Å3 |
| Hydrophobicity | 0.273 |
| Hydrophilicity | 1.617 |
| Buriedness | 0.812 |
| Don/acc character | 0.493 |
| SiteScore | 1.076 |
| D Score | 0.900 |
| Kd | — |