Complex 9muj
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.01 |
| System mass | 80.37 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 9muj |
| Reference | Tanouti Yousra, Roovers Martine, Wolff Philippe, Lechner Antony, Van Elder Dany, Feller André, Soin Romuald, Gueydan Cyril, Kruys Véronique, Droogmans Louis, Labar Geoffray. 2025. Structural insight into the novel Thermus thermophilus SPOUT methyltransferase RlmR catalysing Um2552 formation in the 23S rRNA A-loop: a case of convergent evolution Nucleic Acids Research |
| Equivalence Class |
NR_all_71129.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAH |
| Residue | . / 301 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/C: rRNA |
| RNA family global | rRNA |
| Volume | 178.36 Å3 |
| Hydrophobicity | 1.164 |
| Hydrophilicity | 0.820 |
| Buriedness | 0.784 |
| Don/acc character | 1.100 |
| SiteScore | 1.100 |
| D Score | 1.143 |
| Kd | — |