Harnessing RIBOnucleic acid - Small molecules Structures
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Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit
SM: CLM SPM SPM SPM SPM
80S yeast ribosome in complex with Fluorolissoclimide
SM: VDU VDU
Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells
Yeast 60S ribosomal subunit, RPL39 deletion
SM: SPM
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Yeast 60S ribosomal subunit
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)
SM: CLM
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)
80S yeast ribosome in complex with Methyllissoclimide
SM: XBI XBI
Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
SM: ATP ATP
Mouse RPL39L integrated into the yeast 60S ribosomal subunit
80S yeast ribosome in complex with Bromolissoclimide
SM: ZWB ZWB
Influenza A/H7N9 polymerase in elongation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A
SM: 2KH
Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation)
SM: A0I
Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation)
Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
SM: GTP
Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
Structure of Candida albicans 80S ribosome in complex with cephaeline
SM: K16 K16 K16 SPK
E167K RF2 on E. coli 70S release complex with UAA
SM: SPM SPM
Crystal structure of RNA G2C4 repeats in complex with small synthetic molecule ANP77
SM: W53
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
SM: NAD SPM SRY
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
SM: NAD
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
mt-SSU in GTPBP8 knock-out cells, state 4
Human 60S ribosomal subunit
SM: ATP SPM SPM SPM SPM SPM
Tilapia Lake Virus polymerase in vRNA pre-termination state (transcriptase conformation)
SM: G2P
Solution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognition
SM: Y59
Solution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognition
SM: Y53
Structure of the SFTSV L protein stalled in a transcription-specific early elongation state with bound capped RNA [TRANSCRIPTION-EARLY-ELONGATION]
Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition
SM: YB3
Human mitochondrial ribosome in complex with antibiotic tigecycline
SM: T1C T1C T1C
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon
SM: EPE
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 1h soaking
SM: VTE
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and ARN25850 after 1h soaking
SM: VTR
Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850
Structure of Oceanobacillus iheyensis group II intron in the presence of Li+ and Mg2+
SM: EPE EPE
Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and intronistat B
Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and ARN25850
SM: EPE EPE VTR
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
SM: A1H4F
YlmH bound to PtRNA-50S
SARS-CoV-2 nsp10-16 methyltransferase in complex with Sangivamycin and m7GpppA-RNA (Cap0-RNA)
SM: SAM SGV
SARS-CoV-2 nsp10-16 methyltransferase in complex with Toyocamycin and m7GpppA-RNA (Cap0-RNA)
SM: TO1
Terminating ribosome with SRI-41315
SM: ZVM
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
SM: WSB
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
SM: VSN
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
SM: VSN VSN
RNA duplex bound with GpppA dinucleotide ligand
SM: G3A G3A
GpppA dinucleotide ligand binding to RNA UC template
GpppA dinucleotide binding to RNA CU template
RNA duplex bound with GMP and AMP monomers
SM: 5GP 5GP AMP
RNA UU template binding to AMP monomer
SM: AMP AMP AMP
Structure of LINE-1 ORF2p with template:primer hybrid
SM: TTP
RNA duplex bound with imidazolium bridged GA dinucleotide
SM: WZW WZW WZW WZW
Crystal structure of RNA device 43 truncation mutant 3 (U100C), holo state
SM: TAC TAC TAC TAC
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8