HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8q5i

System information

Experimental technique Electron Microscopy
Experimental resolution 2.45
System mass 3022.58 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Candida
RCSB PDB Entry 8q5i
Reference Kolosova O., Zgadzay Y., Stetsenko A., Atamas A., Wu C., Sachs M. S., Jenner L., Guskov A., Yusupov M.. . Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy Biopolymers and Cell

Compound K16
Residue . / 3402
Chain ZB / 1
Non-redundant True
Interacting RNA chains A/1
Volume 813.25 Å3
Hydrophobicity 0.387
Hydrophilicity 1.208
Buriedness 0.801
Don/acc character 1.544
SiteScore 1.219
D Score 1.027

Compound K16
Residue . / 3403
Chain AC / 1
Non-redundant True
Interacting RNA chains A/1
Volume 711.38 Å3
Hydrophobicity 0.375
Hydrophilicity 1.020
Buriedness 0.704
Don/acc character 1.499
SiteScore 1.008
D Score 1.030

Compound K16
Residue . / 1801
Chain NM / A
Non-redundant True
Interacting RNA chains TA/A
Volume 176.65 Å3
Hydrophobicity 0.379
Hydrophilicity 0.874
Buriedness 0.668
Don/acc character 4.471
SiteScore 0.968
D Score 0.807

Compound SPK
Residue . / 3401
Chain YB / 1
Non-redundant True
Interacting RNA chains A/1
Volume 394.11 Å3
Hydrophobicity 0.073
Hydrophilicity 1.188
Buriedness 0.645
Don/acc character 1.386
SiteScore 1.114
D Score 0.940