Complex 8scb
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.50 |
| System mass | 3615.29 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Oryctolagus |
| RCSB PDB Entry | 8scb |
| Reference | Coelho João P. L., Yip Matthew C. J., Oltion Keely, Taunton Jack, Shao Sichen. 2024. The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center Nature Chemical Biology |
| Equivalence Class |
NR_all_21280.51,
NR_all_06650.50
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ZVM |
| Residue | . / 501 |
| Chain | RO / ii |
| Non-redundant | True |
| Interacting RNA chains | VA/5, YA/9 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | VA/5: rRNA, YA/9: rRNA |
| RNA family global | rRNA |
| Volume | 535.08 Å3 |
| Hydrophobicity | 0.720 |
| Hydrophilicity | 1.390 |
| Buriedness | 0.804 |
| Don/acc character | 1.045 |
| SiteScore | 1.071 |
| D Score | 0.969 |
| Kd | — |