HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8pv5

System information

Experimental technique Electron Microscopy
Experimental resolution 2.86
System mass 2765.49 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Thermochaetoides
RCSB PDB Entry 8pv5
Reference Thoms Matthias, Lau Benjamin, Cheng Jingdong, Fromm Lisa, Denk Timo, Kellner Nikola, Flemming Dirk, Fischer Paulina, Falquet Laurent, Berninghausen Otto, Beckmann Roland, Hurt Ed. . Structural insights into coordinating 5S RNP rotation with ITS2 pre‐RNA processing during ribosome formation The EMBO Reports
Equivalence Class NR_all_93493.10
BGSU version: 4.49

Compound GTP
Residue . / 1000
Chain FB / Cd
Non-redundant True
Interacting RNA chains A/C1
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/C1: rRNA
RNA family global rRNA
Volume 292.92 Å3
Hydrophobicity 0.219
Hydrophilicity 1.471
Buriedness 0.750
Don/acc character 0.629
SiteScore 1.035
D Score 0.911
Kd