Complex 8s1p
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 1.96 |
| System mass | 1392.94 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Bacillus |
| RCSB PDB Entry | 8s1p |
| Reference | Takada Hiraku, Paternoga Helge, Fujiwara Keigo, Nakamoto Jose A, Park Esther N, Dimitrova-Paternoga Lyudmila, Beckert Bertrand, Saarma Merilin, Tenson Tanel, Buskirk Allen R, Atkinson Gemma C, Chiba Shinobu, Wilson Daniel N, Hauryliuk Vasili. 2024. A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis Nucleic Acids Research |
| Equivalence Class |
NR_all_41610.25
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CLM |
| Residue | . / 3032 |
| Chain | NB / A |
| Non-redundant | True |
| Interacting RNA chains | D/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | D/A: rRNA |
| RNA family global | rRNA |
| Volume | 619.80 Å3 |
| Hydrophobicity | 0.151 |
| Hydrophilicity | 1.407 |
| Buriedness | 0.833 |
| Don/acc character | 1.422 |
| SiteScore | 1.240 |
| D Score | 0.981 |
| Kd | — |