Complex 8run
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.73 |
| System mass | 129.72 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Oceanobacillus |
| RCSB PDB Entry | 8run |
| Reference | Silvestri Ilaria, Manigrasso Jacopo, Andreani Alessandro, Brindani Nicoletta, Mas Caroline, Reiser Jean-Baptiste, Vidossich Pietro, Martino Gianfranco, McCarthy Andrew A., De Vivo Marco, Marcia Marco. . Targeting the conserved active site of splicing machines with specific and selective small molecule modulators Nature Communications |
| Compound | EPE |
| Residue | . / 401 |
| Chain | B / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 54.54 Å3 |
| Hydrophobicity | 0.052 |
| Hydrophilicity | 1.170 |
| Buriedness | 0.609 |
| Don/acc character | 2.142 |
| SiteScore | 0.427 |
| D Score | 0.266 |
| Compound | EPE |
| Residue | . / 402 |
| Chain | C / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 405.08 Å3 |
| Hydrophobicity | 0.064 |
| Hydrophilicity | 0.949 |
| Buriedness | 0.686 |
| Don/acc character | 3.122 |
| SiteScore | 0.867 |
| D Score | 0.860 |
| Compound | VTR |
| Residue | . / 403 |
| Chain | D / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 278.52 Å3 |
| Hydrophobicity | 0.008 |
| Hydrophilicity | 1.310 |
| Buriedness | 0.631 |
| Don/acc character | 1.003 |
| SiteScore | 0.861 |
| D Score | 0.771 |