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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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1146 RNA-SM complexes found
Structure of complex 6az3

6az3

Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin

SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR

Structure of complex 6az4

6az4

RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G

SM: GP3

Structure of complex 6bfb

6bfb

Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3

SM: DKM

Structure of complex 6c63

6c63

Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO1-Biotin

SM: EKJ EKJ EKJ

Structure of complex 6c64

6c64

Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO3-Biotin

SM: EKM EKM

Structure of complex 6c65

6c65

Crystal Structure of the Mango-II-A22U Fluorescent Aptamer Bound to TO1-Biotin

SM: EKJ EKJ EKJ

Structure of complex 6c8e

6c8e

RNA-imidazolium-bridged intermediate complex, 4h soaking

SM: EQ1 EQ1

Structure of complex 6c8k

6c8k

RNA-activated 2-AIpG monomer complex, 30 min soaking

SM: EQ1 EQ1

Structure of complex 6c8l

6c8l

RNA-activated 2-AIpG monomer complex, 1h soaking

SM: EQ1 EQ1

Structure of complex 6c8m

6c8m

RNA-activated 2-AIpG monomer, 1.5h soaking

SM: EQ1

Structure of complex 6c8o

6c8o

RNA-activated 2-AIpG monomer, 3h soaking

SM: EQ4 EQ4

Structure of complex 6cao

6cao

Structure of the ribosomal decoding complex at ambient temperature

SM: PAR PAR PAR PAR PAR

Structure of complex 6cap

6cap

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

SM: SIS

Structure of complex 6caq

6caq

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: EUS

Structure of complex 6car

6car

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

SM: SIS

Structure of complex 6cas

6cas

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

SM: EUS

Structure of complex 6cb3

6cb3

Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium

SM: GTP GTP

Structure of complex 6cc1

6cc1

Crystal structure of ykoY-alx riboswitch chimera bound to cadmium

SM: GTP GTP

Structure of complex 6cc3

6cc3

Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium

SM: GTP

Structure of complex 6cfj

6cfj

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

SM: EZG EZG

Structure of complex 6cfk

6cfk

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

SM: ARG ARG EZP EZP

Structure of complex 6cfl

6cfl

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

SM: ARG ARG EZM EZM

Structure of complex 6chr

6chr

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

SM: SPM

Structure of complex 6ck4

6ck4

G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp

SM: G4P G4P G4P G4P GTP

Structure of complex 6ck5

6ck5

PRPP riboswitch from T. mathranii bound to PRPP

SM: PRP PRP

Structure of complex 6czr

6czr

The structure of amicetin bound to the 70S ribosome

SM: ARG ARG FSD FSD

Structure of complex 6db8

6db8

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

SM: G4A

Structure of complex 6ddd

6ddd

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

SM: G6V

Structure of complex 6ddg

6ddg

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

SM: G6M

Structure of complex 6dlq

6dlq

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

SM: PRP

Structure of complex 6dlr

6dlr

PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure

SM: PRP

Structure of complex 6dls

6dls

PRPP Riboswitch bound to PRPP, thallium acetate soaked structure

SM: PRP

Structure of complex 6dlt

6dlt

PRPP Riboswitch bound to PRPP, native structure

SM: PRP

Structure of complex 6dmc

6dmc

ppGpp Riboswitch bound to ppGpp, native structure

SM: G4P G4P

Structure of complex 6dmd

6dmd

ppGpp Riboswitch bound to ppGpp, manganese chloride structure

SM: G4P G4P

Structure of complex 6dme

6dme

ppGpp Riboswitch bound to ppGpp, thallium acetate structure

SM: G4P

Structure of complex 6dn1

6dn1

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA

SM: GZ7

Structure of complex 6dn2

6dn2

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA

SM: GZG

Structure of complex 6dn3

6dn3

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

SM: GZ4

Structure of complex 6dti

6dti

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

SM: PAR

Structure of complex 6e1s

6e1s

Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine

SM: HLV

Structure of complex 6e1u

6e1u

Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine

SM: HMJ

Structure of complex 6e1v

6e1v

Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine

SM: HMV

Structure of complex 6e1w

6e1w

Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1

SM: HNG

Structure of complex 6e81

6e81

Crystal structure of the Corn aptamer in complex with ThT

SM: TFX

Structure of complex 6e82

6e82

Crystal structure of the Corn aptamer mutant A14U in complex with ThT

SM: TFX

Structure of complex 6e84

6e84

Crystal structure of the Corn aptamer in complex with TO

SM: J0D

Structure of complex 6e8s

6e8s

Structure of the iMango-III aptamer bound to TO1-Biotin

SM: EKJ EKJ SPM

Structure of complex 6e8t

6e8t

Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin

SM: HZG HZG HZG HZG

Structure of complex 6e8u

6e8u

Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin

SM: HZD

Structure of complex 6fz0

6fz0

Crystal structure of the metY SAM V riboswitch

SM: SAM

Structure of complex 6g7z

6g7z

Lariat-capping ribozyme with a shortened DP2 stem loop

SM: MES

Structure of complex 6gaw

6gaw

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

SM: 5GP 5GP SPM SPM SPM

Structure of complex 6gaz

6gaz

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

SM: SPM

Structure of complex 6gyv

6gyv

Lariat-capping ribozyme (circular permutation form)

SM: MES

Structure of complex 6gzk

6gzk

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

SM: FH8

Structure of complex 6gzr

6gzr

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

SM: FH8

Structure of complex 6hag

6hag

The structure of the SAM/SAH-binding riboswitch.

SM: SAH

Structure of complex 6hbt

6hbt

The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine

SM: FXQ

Structure of complex 6hc5

6hc5

The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine

SM: FXT