HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6gaw

System information

Experimental technique Electron Microscopy
Experimental resolution 3.20
System mass 3207.14 kDa
Deposition year 2018
Molecule type RNA/Protein
# RNA entities 1
Organism Sus
RCSB PDB Entry 6gaw
Reference Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G., Boehringer Daniel, Filipovska Aleksandra, Ban Nenad. . Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM Nature

Compound 5GP
Residue . / 3203
Chain OK / BA
Non-redundant True
Interacting RNA chains Q/BA
Volume 325.16 Å3
Hydrophobicity 0.196
Hydrophilicity 1.009
Buriedness 0.645
Don/acc character 1.707
SiteScore 1.102
D Score 0.974

Compound 5GP
Residue . / 3204
Chain PK / BA
Non-redundant True
Interacting RNA chains Q/BA
Volume 237.01 Å3
Hydrophobicity 0.238
Hydrophilicity 1.441
Buriedness 0.577
Don/acc character 0.547
SiteScore 1.069
D Score 0.817

Compound SPM
Residue . / 3205
Chain QK / BA
Non-redundant True
Interacting RNA chains Q/BA
Volume 671.94 Å3
Hydrophobicity 0.176
Hydrophilicity 1.386
Buriedness 0.814
Don/acc character 1.552
SiteScore 1.078
D Score 0.977

Compound SPM
Residue . / 201
Chain DL / BR
Non-redundant True
Interacting RNA chains Q/BA
Volume 608.83 Å3
Hydrophobicity 0.198
Hydrophilicity 1.113
Buriedness 0.739
Don/acc character 1.288
SiteScore 1.027
D Score 1.021

Compound SPM
Residue . / 3001
Chain JL / AA
Non-redundant True
Interacting RNA chains JB/AA
Volume 807.08 Å3
Hydrophobicity 0.175
Hydrophilicity 1.164
Buriedness 0.786
Don/acc character 2.584
SiteScore 1.209
D Score 1.032