Complex 6e8s
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.35 |
| System mass | 25.88 kDa |
| Deposition year | 2018 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6e8s |
| Reference | Trachman Robert J., Autour Alexis, Jeng Sunny C. Y., Abdolahzadeh Amir, Andreoni Alessio, Cojocaru Razvan, Garipov Ramil, Dolgosheina Elena V., Knutson Jay R., Ryckelynck Michael, Unrau Peter J., Ferré-D’Amaré Adrian R.. . Structure and functional reselection of the Mango-III fluorogenic RNA aptamer Nature Chemical Biology |
| Equivalence Class |
NR_all_08239.3
BGSU version: 4.49 |
| Compound | EKJ |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 420.18 Å3 |
| Hydrophobicity | 1.589 |
| Hydrophilicity | 0.748 |
| Buriedness | 0.724 |
| Don/acc character | 1.825 |
| SiteScore | 0.680 |
| D Score | 1.131 |
| Kd | 2.3nM |
| Compound | EKJ |
| Residue | . / 101 |
| Chain | G / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 416.75 Å3 |
| Hydrophobicity | 1.526 |
| Hydrophilicity | 0.777 |
| Buriedness | 0.709 |
| Don/acc character | 1.879 |
| SiteScore | 0.769 |
| D Score | 1.112 |
| Kd | 2.3nM |
| Compound | SPM |
| Residue | . / 107 |
| Chain | M / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |