Complex 6cc1
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.54 |
| System mass | 70.05 kDa |
| Deposition year | 2018 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Lactococcus |
| RCSB PDB Entry | 6cc1 |
| Reference | Bachas Sharrol T., Ferré-D'Amaré Adrian R.. 2018. Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators Cell Chemical Biology |
| Equivalence Class |
NR_all_18848.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GTP |
| Residue | . / 214 |
| Chain | P / A |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch, B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 103.24 Å3 |
| Hydrophobicity | 0.391 |
| Hydrophilicity | 0.680 |
| Buriedness | 0.554 |
| Don/acc character | 1.244 |
| SiteScore | 0.859 |
| D Score | 0.713 |
| Kd | — |
| Compound | GTP |
| Residue | . / 201 |
| Chain | Q / B |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch, B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 22.98 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 0.743 |
| Buriedness | 0.498 |
| Don/acc character | 2.849 |
| SiteScore | 0.594 |
| D Score | 0.382 |
| Kd | — |