Complex 6czr
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.14 |
| System mass | 4856.57 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6czr |
| Reference | Serrano Catherine M., Kanna Reddy Hariprasada Reddy, Eiler Daniel, Koch Michael, Tresco Ben I. C., Barrows Louis R., VanderLinden Ryan T., Testa Charles A., Sebahar Paul R., Looper Ryan E.. . Unifying the Aminohexopyranose‐ and Peptidyl‐Nucleoside Antibiotics: Implications for Antibiotic Design Angewandte Chemie |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 3799 |
| Chain | SHA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 552.92 Å3 |
| Hydrophobicity | 0.116 |
| Hydrophilicity | 1.395 |
| Buriedness | 0.706 |
| Don/acc character | 0.647 |
| SiteScore | 1.006 |
| D Score | 0.909 |
| Kd | — |
| Compound | ARG |
| Residue | . / 223 |
| Chain | EKA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 195.51 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.986 |
| Buriedness | 0.604 |
| Don/acc character | 0.816 |
| SiteScore | 0.945 |
| D Score | 0.473 |
| Kd | — |
| Compound | FSD |
| Residue | . / 3801 |
| Chain | UHA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 595.11 Å3 |
| Hydrophobicity | 0.243 |
| Hydrophilicity | 1.918 |
| Buriedness | 0.733 |
| Don/acc character | 0.531 |
| SiteScore | 0.997 |
| D Score | 0.755 |
| Kd | — |
| Compound | FSD |
| Residue | . / 3553 |
| Chain | LRB / 2A |
| Non-redundant | True |
| Interacting RNA chains | AB/2A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | AB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 691.83 Å3 |
| Hydrophobicity | 0.157 |
| Hydrophilicity | 1.738 |
| Buriedness | 0.734 |
| Don/acc character | 0.620 |
| SiteScore | 1.174 |
| D Score | 0.814 |
| Kd | — |