HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6dmc

System information

Experimental technique X-ray
Experimental resolution 2.20
System mass 68.62 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism Sulfobacillus
RCSB PDB Entry 6dmc
Reference Peselis Alla, Serganov Alexander. . ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands Nature Chemical Biology

Compound G4P
Residue . / 201
Chain C / A
Non-redundant True
Interacting RNA chains A/A
Volume 281.26 Å3
Hydrophobicity 0.121
Hydrophilicity 1.155
Buriedness 0.630
Don/acc character 0.940
SiteScore 0.913
D Score 0.888

Compound G4P
Residue . / 201
Chain W / B
Non-redundant True
Interacting RNA chains B/B
Volume 481.23 Å3
Hydrophobicity 0.154
Hydrophilicity 1.042
Buriedness 0.638
Don/acc character 1.297
SiteScore 0.960
D Score 0.983